LMGene

DOI: 10.18129/B9.bioc.LMGene    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see LMGene.

LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays

Bioconductor version: 3.9

LMGene package for analysis of microarray data using a linear model and glog data transformation

Author: David Rocke, Geun Cheol Lee, John Tillinghast, Blythe Durbin-Johnson, and Shiquan Wu

Maintainer: Blythe Durbin-Johnson <bpdurbin at ucdavis.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LMGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LMGene")

 

PDF	R Script	LMGene User's Guide
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Preprocessing, Software
Version	2.40.0
In Bioconductor since	BioC 1.8 (R-2.3) (13.5 years)
License	LGPL
Depends	R (>= 2.10.0), Biobase(>= 2.5.5), multtest, survival, affy
Imports
LinkingTo
Suggests	affydata
SystemRequirements
Enhances
URL	http://dmrocke.ucdavis.edu/software.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	LMGene_2.40.0.tar.gz
Windows Binary	LMGene_2.40.0.zip
Mac OS X 10.11 (El Capitan)	LMGene_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/LMGene
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/LMGene
Package Short Url	https://bioconductor.org/packages/LMGene/
Package Downloads Report	Download Stats