MetaCyto

DOI: 10.18129/B9.bioc.MetaCyto    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MetaCyto.

MetaCyto: A package for meta-analysis of cytometry data

Bioconductor version: 3.9

This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.

Author: Zicheng Hu, Chethan Jujjavarapu, Sanchita Bhattacharya, Atul J. Butte

Maintainer: Zicheng Hu <zicheng.hu at ucsf.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaCyto")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaCyto")

 

HTML	R Script	Vignette Title
PDF		Reference Manual

Details

biocViews	CellBasedAssays, CellBiology, Clustering, FlowCytometry, ImmunoOncology, Preprocessing, Software, StatisticalMethod
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	flowCore(>= 1.4), tidyr (>= 0.7), fastcluster, ggplot2, metafor, cluster, FlowSOM, grDevices, graphics, stats, utils
LinkingTo
Suggests	knitr, dplyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaCyto_1.6.0.tar.gz
Windows Binary	MetaCyto_1.6.0.zip
Mac OS X 10.11 (El Capitan)	MetaCyto_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetaCyto
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaCyto
Package Short Url	https://bioconductor.org/packages/MetaCyto/
Package Downloads Report	Download Stats