Metab

DOI: 10.18129/B9.bioc.Metab    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Metab.

Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.

Bioconductor version: 3.9

Metab is an R package for high-throughput processing of metabolomics data analysed by the Automated Mass Spectral Deconvolution and Identification System (AMDIS) (http://chemdata.nist.gov/mass-spc/amdis/downloads/). In addition, it performs statistical hypothesis test (t-test) and analysis of variance (ANOVA). Doing so, Metab considerably speed up the data mining process in metabolomics and produces better quality results. Metab was developed using interactive features, allowing users with lack of R knowledge to appreciate its functionalities.

Author: Raphael Aggio <ragg005 at aucklanduni.ac.nz>

Maintainer: Raphael Aggio <ragg005 at aucklanduni.ac.nz>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Metab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Metab")

 

PDF	R Script	Applying Metab
PDF		Reference Manual
Text		NEWS

Details

biocViews	AMDIS, GCMS, ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL (>=2)
Depends	xcms, R (>= 3.0.1), svDialogs
Imports	pander
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Metab_1.18.0.tar.gz
Windows Binary	Metab_1.18.0.zip
Mac OS X 10.11 (El Capitan)	Metab_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Metab
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Metab
Package Short Url	https://bioconductor.org/packages/Metab/
Package Downloads Report	Download Stats