PAIRADISE

DOI: 10.18129/B9.bioc.PAIRADISE    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PAIRADISE.

PAIRADISE: Paired analysis of differential isoform expression

Bioconductor version: 3.9

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Shihao Shen, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PAIRADISE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")

 

HTML	R Script	PAIRADISE
PDF		Reference Manual
Text		LICENSE

Details

biocViews	AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 3.6), nloptr
Imports	SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PAIRADISE_1.0.0.tar.gz
Windows Binary	PAIRADISE_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	PAIRADISE_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PAIRADISE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PAIRADISE
Package Short Url	https://bioconductor.org/packages/PAIRADISE/
Package Downloads Report	Download Stats