PepsNMR

DOI: 10.18129/B9.bioc.PepsNMR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PepsNMR.

Pre-process 1H-NMR FID signals

Bioconductor version: 3.9

This package provides R functions for common pre-procssing steps that are applied on 1H-NMR data. It also provides a function to read the FID signals directly in the Bruker format.

Author: Manon Martin [aut, cre], Bernadette Govaerts [aut, ths], Benoît Legat [aut], Pascal de Tullio [dtc], Bruno Boulanger [ctb], Paul H.C. Eilers [ctb], Julien Vanwinsberghe [ctb]

Maintainer: Manon Martin <manon.martin at uclouvain.be>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PepsNMR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PepsNMR")

 

HTML	R Script	Application of PepsNMR on the Human Serum dataset
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Metabolomics, Preprocessing, Software, Visualization
Version	1.2.1
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL-2 | file LICENSE
Depends	R (>= 3.5)
Imports	Matrix, ptw, ggplot2, gridExtra, matrixStats, reshape2, methods, graphics, stats
LinkingTo
Suggests	knitr, markdown, rmarkdown, BiocStyle, PepsNMRData
SystemRequirements
Enhances
URL	https://github.com/ManonMartin/PepsNMR
BugReports	https://github.com/ManonMartin/PepsNMR/issues
Depends On Me
Imports Me	ASICS
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PepsNMR_1.2.1.tar.gz
Windows Binary	PepsNMR_1.2.1.zip
Mac OS X 10.11 (El Capitan)	PepsNMR_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PepsNMR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PepsNMR
Package Short Url	https://bioconductor.org/packages/PepsNMR/
Package Downloads Report	Download Stats