RTNduals

DOI: 10.18129/B9.bioc.RTNduals    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RTNduals.

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: 3.9

RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTNduals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTNduals")

 

HTML	R Script	RTNduals: analysis of co-regulation and inference of dual regulons.
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version	1.8.3
In Bioconductor since	BioC 3.5 (R-3.4) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), RTN(>= 2.6.3), methods
Imports	graphics, grDevices, stats, utils
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	RTNsurvival
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RTNduals_1.8.3.tar.gz
Windows Binary	RTNduals_1.8.3.zip
Mac OS X 10.11 (El Capitan)	RTNduals_1.8.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RTNduals
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTNduals
Package Short Url	https://bioconductor.org/packages/RTNduals/
Package Downloads Report	Download Stats