RcwlPipelines

DOI: 10.18129/B9.bioc.RcwlPipelines    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RcwlPipelines.

Bioinformatics pipelines based on Rcwl

Bioconductor version: 3.9

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")

 

HTML	R Script	Rcwl Pipelines
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version	1.0.11
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL-2
Depends	R (>= 3.6), Rcwl, BiocFileCache
Imports	dplyr, rappdirs, jsonlite, methods
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle
SystemRequirements	nodejs
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RcwlPipelines_1.0.11.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	RcwlPipelines_1.0.11.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RcwlPipelines
Package Short Url	https://bioconductor.org/packages/RcwlPipelines/
Package Downloads Report	Download Stats