affyPara

DOI: 10.18129/B9.bioc.affyPara    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see affyPara.

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Bioconductor version: 3.9

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyPara")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyPara")

 

PDF	R Script	Parallelized affy functions for preprocessing
PDF	R Script	Simulation Study for VSN Add-On Normalization and Subsample Size
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Microarray, Preprocessing, Software
Version	1.44.0
In Bioconductor since	BioC 2.2 (R-2.7) (11.5 years)
License	GPL-3
Depends	R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio
Imports
LinkingTo
Suggests	affydata
SystemRequirements
Enhances	affy
URL	http://www.ibe.med.uni-muenchen.de
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyPara_1.44.0.tar.gz
Windows Binary	affyPara_1.44.0.zip
Mac OS X 10.11 (El Capitan)	affyPara_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyPara
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyPara
Package Short Url	https://bioconductor.org/packages/affyPara/
Package Downloads Report	Download Stats