apComplex

DOI: 10.18129/B9.bioc.apComplex    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see apComplex.

Estimate protein complex membership using AP-MS protein data

Bioconductor version: 3.9

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("apComplex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apComplex")

 

PDF	R Script	apComplex
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version	2.50.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	LGPL
Depends	R (>= 2.10), graph, RBGL
Imports	Rgraphviz, stats, org.Sc.sgd.db
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	ScISI
Imports Me
Suggests Me	BiocCaseStudies
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	apComplex_2.50.0.tar.gz
Windows Binary	apComplex_2.50.0.zip
Mac OS X 10.11 (El Capitan)	apComplex_2.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/apComplex
Package Short Url	https://bioconductor.org/packages/apComplex/
Package Downloads Report	Download Stats