clstutils

DOI: 10.18129/B9.bioc.clstutils    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see clstutils.

Tools for performing taxonomic assignment.

Bioconductor version: 3.9

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clstutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")

 

PDF	R Script	clst
PDF	R Script	clstutils
PDF		Reference Manual

Details

biocViews	Classification, QualityControl, Sequencing, Software, Visualization
Version	1.32.0
In Bioconductor since	BioC 2.8 (R-2.13) (8.5 years)
License	GPL-3
Depends	R (>= 2.10), clst, rjson, ape
Imports	lattice, RSQLite
LinkingTo
Suggests	RUnit, RSVGTipsDevice
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	clstutils_1.32.0.tar.gz
Windows Binary	clstutils_1.32.0.zip
Mac OS X 10.11 (El Capitan)	clstutils_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/clstutils
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clstutils
Package Short Url	https://bioconductor.org/packages/clstutils/
Package Downloads Report	Download Stats