dupRadar

DOI: 10.18129/B9.bioc.dupRadar    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see dupRadar.

Assessment of duplication rates in RNA-Seq datasets

Bioconductor version: 3.9

Duplication rate quality control for RNA-Seq datasets.

Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dupRadar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dupRadar")

 

HTML	R Script	Using dupRadar
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology
Version	1.14.0
In Bioconductor since	BioC 3.2 (R-3.2) (4 years)
License	GPL-3
Depends	R (>= 3.2.0)
Imports	Rsubread(>= 1.14.1)
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, AnnotationHub
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dupRadar_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	dupRadar_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dupRadar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dupRadar
Package Short Url	https://bioconductor.org/packages/dupRadar/
Package Downloads Report	Download Stats