farms

DOI: 10.18129/B9.bioc.farms    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see farms.

FARMS - Factor Analysis for Robust Microarray Summarization

Bioconductor version: 3.9

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("farms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("farms")

 

PDF	R Script	Using farms
PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version	1.36.0
In Bioconductor since	BioC 2.7 (R-2.12) (9 years)
License	LGPL (>= 2.1)
Depends	R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports	affy, MASS, Biobase(>= 1.13.41), methods, graphics
LinkingTo
Suggests	affydata, Biobase, utils
SystemRequirements
Enhances
URL	http://www.bioinf.jku.at/software/farms/farms.html
Depends On Me
Imports Me
Suggests Me	DEqMS
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	farms_1.36.0.tar.gz
Windows Binary	farms_1.36.0.zip
Mac OS X 10.11 (El Capitan)	farms_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/farms
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/farms
Package Short Url	https://bioconductor.org/packages/farms/
Package Downloads Report	Download Stats