flowCHIC

DOI: 10.18129/B9.bioc.flowCHIC    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowCHIC.

Analyze flow cytometric data using histogram information

Bioconductor version: 3.9

A package to analyze flow cytometric data of complex microbial communities based on histogram images

Author: Joachim Schumann <joachim.schumann at ufz.de>, Christin Koch <christin.koch at ufz.de>, Ingo Fetzer <info.fetzer at stockholmresilience.su.se>, Susann Müller <susann.mueller at ufz.de>

Maintainer: Author: Joachim Schumann <joachim.schumann at ufz.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCHIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCHIC")

 

PDF	R Script	Analyze flow cytometric data using histogram information
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL-2
Depends	R (>= 3.1.0)
Imports	methods, flowCore, EBImage, vegan, hexbin, ggplot2, grid
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URL	http://www.ufz.de/index.php?en=16773
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowCHIC_1.18.0.tar.gz
Windows Binary	flowCHIC_1.18.0.zip
Mac OS X 10.11 (El Capitan)	flowCHIC_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowCHIC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowCHIC
Package Short Url	https://bioconductor.org/packages/flowCHIC/
Package Downloads Report	Download Stats