flowDensity

DOI: 10.18129/B9.bioc.flowDensity    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowDensity.

Sequential Flow Cytometry Data Gating

Bioconductor version: 3.9

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")

 

PDF	R Script	Automated alternative to the current manual gating practice
PDF	R Script	Automated alternative to the current manual gating practice
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Bioinformatics, Cancer, CellBiology, Clustering, DensityGating, FlowCytData, FlowCytometry, ImmunoOncology, Software, StemCells
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	Artistic-2.0
Depends
Imports	flowCore, graphics, car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.20.5), methods, stats, grDevices
LinkingTo
Suggests
SystemRequirements	GEOS (>= 3.2.0);for building from source: GEOS from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by William Kyngesburye at http://www.kyngchaos.com/ may be used for source installs on OSX.
Enhances
URL
Depends On Me
Imports Me	ddPCRclust
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowDensity_1.18.0.tar.gz
Windows Binary	flowDensity_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	flowDensity_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowDensity
Package Short Url	https://bioconductor.org/packages/flowDensity/
Package Downloads Report	Download Stats