flowPeaks

DOI: 10.18129/B9.bioc.flowPeaks    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowPeaks.

An R package for flow data clustering

Bioconductor version: 3.9

A fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

Author: Yongchao Ge<yongchao.ge at gmail.com>

Maintainer: Yongchao Ge<yongchao.ge at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowPeaks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPeaks")

 

PDF	R Script	Tutorial of flowPeaks package
PDF		Reference Manual
Text		README

Details

biocViews	Clustering, FlowCytometry, Gating, ImmunoOncology, Software
Version	1.30.0
In Bioconductor since	BioC 2.11 (R-2.15) (7 years)
License	Artistic-1.0
Depends	R (>= 2.12.0)
Imports
LinkingTo
Suggests
SystemRequirements	gsl
Enhances	flowCore
URL
Depends On Me
Imports Me	CONFESS, ddPCRclust
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowPeaks_1.30.0.tar.gz
Windows Binary	flowPeaks_1.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	flowPeaks_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowPeaks
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowPeaks
Package Short Url	https://bioconductor.org/packages/flowPeaks/
Package Downloads Report	Download Stats