geneplotter

DOI: 10.18129/B9.bioc.geneplotter    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see geneplotter.

Graphics related functions for Bioconductor

Bioconductor version: 3.9

Functions for plotting genomic data

Author: R. Gentleman, Biocore

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplotter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geneplotter")

 

PDF	R Script	How to assemble a chromLocation object
PDF	R Script	Visualization of Microarray Data
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Software, Visualization
Version	1.62.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate
Imports	AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils
LinkingTo
Suggests	Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db
SystemRequirements
Enhances
URL
Depends On Me	HD2013SGI, Hiiragi2013, HMMcopy, maEndToEnd, PGPC
Imports Me	biocGraph, DESeq, DESeq2, DEXSeq, ENmix, EnrichmentBrowser, flowQ, GSVA, IsoGeneGUI, JunctionSeq, MethylSeekR, RNAinteract, RNAither
Suggests Me	AgiMicroRna, BiocCaseStudies, biocGraph, Category, chimera, GOstats, Single.mTEC.Transcriptomes
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geneplotter_1.62.0.tar.gz
Windows Binary	geneplotter_1.62.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	geneplotter_1.62.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/geneplotter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/geneplotter
Package Short Url	https://bioconductor.org/packages/geneplotter/
Package Downloads Report	Download Stats