mirIntegrator

DOI: 10.18129/B9.bioc.mirIntegrator    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see mirIntegrator.

Integrating microRNA expression into signaling pathways for pathway analysis

Bioconductor version: 3.9

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

Author: Diana Diaz <dmd at wayne dot edu>

Maintainer: Diana Diaz <dmd at wayne.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mirIntegrator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirIntegrator")

 

PDF	R Script	mirIntegrator Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, KEGG, Microarray, Network, Pathways, Software
Version	1.14.0
In Bioconductor since	BioC 3.2 (R-3.2) (4 years)
License	GPL (>=3)
Depends	R (>= 3.3)
Imports	graph, ROntoTools, ggplot2, org.Hs.eg.db, AnnotationDbi, Rgraphviz
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL	http://datad.github.io/mirIntegrator/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mirIntegrator_1.14.0.tar.gz
Windows Binary	mirIntegrator_1.14.0.zip
Mac OS X 10.11 (El Capitan)	mirIntegrator_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mirIntegrator
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mirIntegrator
Package Short Url	https://bioconductor.org/packages/mirIntegrator/
Package Downloads Report	Download Stats