pogos

DOI: 10.18129/B9.bioc.pogos    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pogos.

PharmacOGenomics Ontology Support

Bioconductor version: 3.9

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pogos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pogos")

 

HTML	R Script	pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology
PDF		Reference Manual

Details

biocViews	ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports	methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
LinkingTo
Suggests	knitr, DT, ontologyPlot, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	BiocOncoTK
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pogos_1.4.0.tar.gz
Windows Binary	pogos_1.4.0.zip
Mac OS X 10.11 (El Capitan)	pogos_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pogos
Package Short Url	https://bioconductor.org/packages/pogos/
Package Downloads Report	Download Stats