qPLEXanalyzer

DOI: 10.18129/B9.bioc.qPLEXanalyzer    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see qPLEXanalyzer.

Tools for qPLEX-RIME data analysis

Bioconductor version: 3.9

Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")

 

PDF	R Script	qPLEXanalyzer.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.2.0
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	GPL-2
Depends	R (>= 3.6), Biobase, statmod, MSnbase
Imports	tidyr, preprocessCore, limma, ggplot2, RColorBrewer, stats, utils, Biostrings, GenomicRanges, IRanges, graphics, BiocGenerics, stringr, purrr, tibble, ggdendro, grDevices, dplyr, magrittr, assertthat
LinkingTo
Suggests	UniProt.ws, knitr, qPLEXdata
SystemRequirements
Enhances
URL
BugReports	https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Depends On Me	qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qPLEXanalyzer_1.2.0.tar.gz
Windows Binary	qPLEXanalyzer_1.2.0.zip
Mac OS X 10.11 (El Capitan)	qPLEXanalyzer_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Package Short Url	https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report	Download Stats