sscore

DOI: 10.18129/B9.bioc.sscore    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see sscore.

S-Score Algorithm for Affymetrix Oligonucleotide Microarrays

Bioconductor version: 3.9

This package contains an implementation of the S-Score algorithm as described by Zhang et al (2002).

Author: Richard Kennedy <rkennedy at ms.soph.uab.edu>, based on C++ code from Li Zhang <zhangli at odin.mdacc.tmc.edu> and Borland Delphi code from Robnet Kerns <rtkerns at vcu.edu>.

Maintainer: Richard Kennedy <rkennedy at ms.soph.uab.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sscore")

 

PDF	R Script	SScore primer
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Software
Version	1.56.0
In Bioconductor since	BioC 1.8 (R-2.3) (13.5 years)
License	GPL (>= 2)
Depends	R (>= 1.8.0), affy, affyio
Imports
LinkingTo
Suggests	affydata
SystemRequirements
Enhances
URL	http://home.att.net/~richard-kennedy/professional.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sscore_1.56.0.tar.gz
Windows Binary	sscore_1.56.0.zip
Mac OS X 10.11 (El Capitan)	sscore_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sscore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sscore
Package Short Url	https://bioconductor.org/packages/sscore/
Package Downloads Report	Download Stats