statTarget

DOI: 10.18129/B9.bioc.statTarget    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see statTarget.

Statistical Analysis of Molecular Profiles

Bioconductor version: 3.9

A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

Author: Hemi Luan

Maintainer: Hemi Luan <hemi.luan at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("statTarget")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("statTarget")

 

HTML	R Script	QC_free approach with Combat method
HTML	R Script	statTarget2 for pathway analysis
HTML	R Script	statTarget2 On using the Graphical User Interface
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, ComBat, DifferentialExpression, GUI, ImmunoOncology, Lipidomics, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QC-RFSC, QC-RLSC, QualityControl, Software, Visualization
Version	1.14.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	LGPL (>= 3)
Depends	R (>= 3.3.0)
Imports	randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown, gWidgets2, gWidgets2RGtk2, RGtk2
SystemRequirements
Enhances
URL	https://stattarget.github.io
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	statTarget_1.14.0.tar.gz
Windows Binary	statTarget_1.14.0.zip
Mac OS X 10.11 (El Capitan)	statTarget_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/statTarget
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/statTarget
Package Short Url	https://bioconductor.org/packages/statTarget/
Package Downloads Report	Download Stats