switchde

DOI: 10.18129/B9.bioc.switchde    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see switchde.

Switch-like differential expression across single-cell trajectories

Bioconductor version: 3.9

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")

 

HTML	R Script	An overview of the switchde package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	GPL (>= 2)
Depends	R (>= 3.4), SingleCellExperiment
Imports	SummarizedExperiment, dplyr, ggplot2, methods, stats
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
SystemRequirements
Enhances
URL	https://github.com/kieranrcampbell/switchde
BugReports	https://github.com/kieranrcampbell/switchde
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchde_1.10.0.tar.gz
Windows Binary	switchde_1.10.0.zip
Mac OS X 10.11 (El Capitan)	switchde_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/switchde
Package Short Url	https://bioconductor.org/packages/switchde/
Package Downloads Report	Download Stats