IMMAN is specified to retrieve the interlog protein network shared across diverse species. For this aim, first we exceed orthology relationships among sequences from various species by iterating over any pair of input species, and using the Needleman-Wunsch alignment algorithm and a best reciprocal hit strategy to reach the orthologues through all versus all pairwise cross-species alignments. From orthology assignment, we derive Orthologous Protein sets (OPSs), an assortment of clusters of orthologues(maximum one per species) which will conform the nodes of the so-called Interolog Protein Network (IPN).
We exceed n species-specific interlog protein networks from STRING database, where each node maps to a single OPS in the IPN, and distinguish the edges of the outcome IPN by choosing only edges linking nodes in the IPN that also are linked in at least species-specific networks (where ‘k’ is set as a parameter).
A scoring system is used by the alignment process, which can be described as a set of values specified for quantifying the likelihood of one residue that has been substituted by another in an alignment. The scoring systems used by alignment procedure is called a substitution matrix and it can be achieved from statistical analysis of residue substitution data from sets of reputable alignments of highly relevent sequences. Using identityU value which ranges from 0 to 100, user would be able to specialize how the IPNs should be larger or not. As the value of identityU gets higher, the algorithm will find much similar orthologs and vice versa. We used gapOpening and gapExtension arguments to figure numeric values of ortholog proteins. For matching alignments of proteins if we skip a protein, gapOpening argument would be incremented. The smaller the amount of gap, protein alignements are more similar to each other. The score_threshold argument is specified for evaluating the similarity values between two proteins in substitutionMatrix. It differs from 0 to 100, however, the common use ranges from 25 to 30. The transference of interactionn among orthologs of different species called the interlog approach. We used Besthit argument to reach proteins which has the most similarity in all versus all protein alignment. If an interaction was exist between each pair of proteins of OPSs, an edge would be linked in the IPN. The coverage_threshold specifies the number of interactions that are exist among pair of proteins of OPSs. It differs from 1 to number of species. As much as the value of coverage_threshold was high, the final IPN would be more robust and usually smaller. NetworkShrinkage argument determine whether two similar OPSs which have ortholog proteins in common should be merged or not. If it was TRUE the resulting IPN would be smaller.
For using this package, we assume that the “CINNA” package has been properly installed into the R environment. After installations, the “CINNA” package can be loaded via
For illustration, we will read two datasets from different species which can be accessed via:
Then, we have to make a list of dataset species and set their taxanomy IDs.
ProteinLists = list(as.character(Celegance$V1), as.character(FruitFly$V1))
List1_Species_ID = 6239 # taxonomy ID Celegance
List2_Species_ID = 7227 # taxonomy ID FruitFly
Species_IDs = c(List1_Species_ID, List2_Species_ID)To continue, set the parameters to run the analysis. Here is a description of parameters in IMMAN. If you need more information you can refer to the paper.
identityU: Cut off value for selecting proteins whose alignment score is greater or equal than identityU.
substitutionMatrix: Which scoring matrix to be used for alignment setting gapOpening and gapExtension for alignment purposes.
For NetworkShrinkage, coverage, and BestHit refer to paper.
STRINGversion: Indicated which version of STRING database should program search in for the score of PPIs.
Then, we will set the argument values:
identityU = 30
substitutionMatrix = "BLOSUM62"
gapOpening = -8
gapExtension = -8
NetworkShrinkage = FALSE
coverage = 1
BestHit = TRUE
score_threshold = 400
STRINGversion="10"Finally, we can run the IMMAN function:
output = IMMAN(ProteinLists, fileNames=NULL, Species_IDs,
identityU, substitutionMatrix,
gapOpening, gapExtension, BestHit,
coverage, NetworkShrinkage,
score_threshold, STRINGversion,
InputDirectory = getwd())## Step 1/4:Downloading amino acid sequences...## Downloading amino acid sequences of List1## Downloading amino acid sequences of List2## Step 2/4: Alignment...## Align List1 with List2## Step 3/4: Detection in STRING...## Detecting List1 in STRING## Detecting List2 in STRING## Step 4/4: Retrieving String Network...## Retrieving List1## Retrieving List2## Producing IPN...## DONE!
In order to see some particular parts of the result, you can use:
## node1 node2
## 41 OPS0001 OPS0004
## 91 OPS0001 OPS0009
## 191 OPS0001 OPS0019
## 211 OPS0001 OPS0021
## 251 OPS0001 OPS0025
## 271 OPS0001 OPS0027
## 301 OPS0001 OPS0030
## 311 OPS0001 OPS0031
## 361 OPS0001 OPS0036
## 371 OPS0001 OPS0037
## 441 OPS0001 OPS0044
## 491 OPS0001 OPS0049
## 551 OPS0001 OPS0055
## 611 OPS0001 OPS0061
## 231 OPS0002 OPS0023
## 561 OPS0002 OPS0056
## 71 OPS0004 OPS0007
## 911 OPS0004 OPS0009
## 111 OPS0004 OPS0011
## 121 OPS0004 OPS0012
## 171 OPS0004 OPS0017
## 241 OPS0004 OPS0024
## 2511 OPS0004 OPS0025
## 421 OPS0004 OPS0042
## 621 OPS0004 OPS0062
## 711 OPS0006 OPS0007
## 81 OPS0006 OPS0008
## 1211 OPS0006 OPS0012
## 151 OPS0006 OPS0015
## 161 OPS0006 OPS0016
## 221 OPS0006 OPS0022
## 2411 OPS0006 OPS0024
## 2512 OPS0006 OPS0025
## 261 OPS0006 OPS0026
## 281 OPS0006 OPS0028
## 291 OPS0006 OPS0029
## 3011 OPS0006 OPS0030
## 3111 OPS0006 OPS0031
## 341 OPS0006 OPS0034
## 3611 OPS0006 OPS0036
## 3711 OPS0006 OPS0037
## 381 OPS0006 OPS0038
## 391 OPS0006 OPS0039
## 461 OPS0006 OPS0046
## 471 OPS0006 OPS0047
## 481 OPS0006 OPS0048
## 501 OPS0006 OPS0050
## 511 OPS0006 OPS0051
## 581 OPS0006 OPS0058
## 591 OPS0006 OPS0059
## 6211 OPS0006 OPS0062
## 811 OPS0007 OPS0008
## 1111 OPS0007 OPS0011
## 1212 OPS0007 OPS0012
## 1511 OPS0007 OPS0015
## 1611 OPS0007 OPS0016
## 181 OPS0007 OPS0018
## 2211 OPS0007 OPS0022
## 2311 OPS0007 OPS0023
## 2412 OPS0007 OPS0024
## 2513 OPS0007 OPS0025
## 2611 OPS0007 OPS0026
## 2811 OPS0007 OPS0028
## 2911 OPS0007 OPS0029
## 3012 OPS0007 OPS0030
## 3112 OPS0007 OPS0031
## 3411 OPS0007 OPS0034
## 3612 OPS0007 OPS0036
## 3712 OPS0007 OPS0037
## 3811 OPS0007 OPS0038
## 3911 OPS0007 OPS0039
## 4711 OPS0007 OPS0047
## 4811 OPS0007 OPS0048
## 5011 OPS0007 OPS0050
## 5111 OPS0007 OPS0051
## 531 OPS0007 OPS0053
## 5811 OPS0007 OPS0058
## 5911 OPS0007 OPS0059
## 6212 OPS0007 OPS0062
## 1112 OPS0008 OPS0011
## 1213 OPS0008 OPS0012
## 1612 OPS0008 OPS0016
## 1811 OPS0008 OPS0018
## 2212 OPS0008 OPS0022
## 2312 OPS0008 OPS0023
## 2413 OPS0008 OPS0024
## 2514 OPS0008 OPS0025
## 2711 OPS0008 OPS0027
## 2912 OPS0008 OPS0029
## 3113 OPS0008 OPS0031
## 3412 OPS0008 OPS0034
## 3713 OPS0008 OPS0037
## 3812 OPS0008 OPS0038
## 3912 OPS0008 OPS0039
## 4211 OPS0008 OPS0042
## 4812 OPS0008 OPS0048
## 5112 OPS0008 OPS0051
## 5311 OPS0008 OPS0053
## 5912 OPS0008 OPS0059
## 6213 OPS0008 OPS0062
## 1113 OPS0009 OPS0011
## 1711 OPS0009 OPS0017
## 2111 OPS0009 OPS0021
## 2712 OPS0009 OPS0027
## 321 OPS0009 OPS0032
## 3613 OPS0009 OPS0036
## 3714 OPS0009 OPS0037
## 4212 OPS0009 OPS0042
## 4411 OPS0009 OPS0044
## 6111 OPS0009 OPS0061
## 4611 OPS0010 OPS0046
## 1214 OPS0011 OPS0012
## 1712 OPS0011 OPS0017
## 2213 OPS0011 OPS0022
## 2313 OPS0011 OPS0023
## 2414 OPS0011 OPS0024
## 2515 OPS0011 OPS0025
## 2713 OPS0011 OPS0027
## 2812 OPS0011 OPS0028
## 2913 OPS0011 OPS0029
## 521 OPS0011 OPS0052
## 6214 OPS0011 OPS0062
## 131 OPS0012 OPS0013
## 1512 OPS0012 OPS0015
## 1613 OPS0012 OPS0016
## 1812 OPS0012 OPS0018
## 2214 OPS0012 OPS0022
## 2314 OPS0012 OPS0023
## 2415 OPS0012 OPS0024
## 2516 OPS0012 OPS0025
## 2714 OPS0012 OPS0027
## 2813 OPS0012 OPS0028
## 2914 OPS0012 OPS0029
## 3013 OPS0012 OPS0030
## 3114 OPS0012 OPS0031
## 3413 OPS0012 OPS0034
## 3614 OPS0012 OPS0036
## 3715 OPS0012 OPS0037
## 3813 OPS0012 OPS0038
## 3913 OPS0012 OPS0039
## 4213 OPS0012 OPS0042
## 4712 OPS0012 OPS0047
## 4813 OPS0012 OPS0048
## 5012 OPS0012 OPS0050
## 5113 OPS0012 OPS0051
## 5312 OPS0012 OPS0053
## 5812 OPS0012 OPS0058
## 5913 OPS0012 OPS0059
## 6215 OPS0012 OPS0062
## 1614 OPS0015 OPS0016
## 1911 OPS0015 OPS0019
## 2215 OPS0015 OPS0022
## 2517 OPS0015 OPS0025
## 2814 OPS0015 OPS0028
## 2915 OPS0015 OPS0029
## 3014 OPS0015 OPS0030
## 3115 OPS0015 OPS0031
## 3615 OPS0015 OPS0036
## 3716 OPS0015 OPS0037
## 3814 OPS0015 OPS0038
## 3914 OPS0015 OPS0039
## 4713 OPS0015 OPS0047
## 4814 OPS0015 OPS0048
## 5013 OPS0015 OPS0050
## 5114 OPS0015 OPS0051
## 5813 OPS0015 OPS0058
## 5914 OPS0015 OPS0059
## 2216 OPS0016 OPS0022
## 2416 OPS0016 OPS0024
## 2612 OPS0016 OPS0026
## 2815 OPS0016 OPS0028
## 2916 OPS0016 OPS0029
## 3015 OPS0016 OPS0030
## 3116 OPS0016 OPS0031
## 3616 OPS0016 OPS0036
## 3717 OPS0016 OPS0037
## 3815 OPS0016 OPS0038
## 3915 OPS0016 OPS0039
## 411 OPS0016 OPS0041
## 4714 OPS0016 OPS0047
## 4815 OPS0016 OPS0048
## 5014 OPS0016 OPS0050
## 5115 OPS0016 OPS0051
## 5814 OPS0016 OPS0058
## 5915 OPS0016 OPS0059
## 6216 OPS0016 OPS0062
## 2715 OPS0017 OPS0027
## 5313 OPS0017 OPS0053
## 6217 OPS0017 OPS0062
## 2417 OPS0018 OPS0024
## 2816 OPS0018 OPS0028
## 2917 OPS0018 OPS0029
## 3211 OPS0018 OPS0032
## 4612 OPS0018 OPS0046
## 5211 OPS0018 OPS0052
## 601 OPS0018 OPS0060
## 201 OPS0019 OPS0020
## 2518 OPS0019 OPS0025
## 2817 OPS0019 OPS0028
## 3016 OPS0019 OPS0030
## 3617 OPS0019 OPS0036
## 3816 OPS0019 OPS0038
## 4715 OPS0019 OPS0047
## 5015 OPS0019 OPS0050
## 5815 OPS0019 OPS0058
## 6218 OPS0019 OPS0062
## 4911 OPS0020 OPS0049
## 2519 OPS0021 OPS0025
## 3017 OPS0021 OPS0030
## 3117 OPS0021 OPS0031
## 3618 OPS0021 OPS0036
## 3718 OPS0021 OPS0037
## 4111 OPS0021 OPS0041
## 4412 OPS0021 OPS0044
## 4912 OPS0021 OPS0049
## 5511 OPS0021 OPS0055
## 6112 OPS0021 OPS0061
## 2315 OPS0022 OPS0023
## 25110 OPS0022 OPS0025
## 2613 OPS0022 OPS0026
## 2716 OPS0022 OPS0027
## 2818 OPS0022 OPS0028
## 2918 OPS0022 OPS0029
## 3018 OPS0022 OPS0030
## 3118 OPS0022 OPS0031
## 3619 OPS0022 OPS0036
## 3719 OPS0022 OPS0037
## 3817 OPS0022 OPS0038
## 3916 OPS0022 OPS0039
## 4716 OPS0022 OPS0047
## 4816 OPS0022 OPS0048
## 5016 OPS0022 OPS0050
## 5116 OPS0022 OPS0051
## 571 OPS0022 OPS0057
## 5816 OPS0022 OPS0058
## 5916 OPS0022 OPS0059
## 6219 OPS0022 OPS0062
## 2418 OPS0023 OPS0024
## 25111 OPS0023 OPS0025
## 3414 OPS0023 OPS0034
## 451 OPS0023 OPS0045
## 4613 OPS0023 OPS0046
## 5314 OPS0023 OPS0053
## 62110 OPS0023 OPS0062
## 25112 OPS0024 OPS0025
## 2919 OPS0024 OPS0029
## 3119 OPS0024 OPS0031
## 3415 OPS0024 OPS0034
## 37110 OPS0024 OPS0037
## 3917 OPS0024 OPS0039
## 4817 OPS0024 OPS0048
## 5117 OPS0024 OPS0051
## 5315 OPS0024 OPS0053
## 5917 OPS0024 OPS0059
## 62111 OPS0024 OPS0062
## 2819 OPS0025 OPS0028
## 3019 OPS0025 OPS0030
## 31110 OPS0025 OPS0031
## 36110 OPS0025 OPS0036
## 3818 OPS0025 OPS0038
## 4717 OPS0025 OPS0047
## 4818 OPS0025 OPS0048
## 5017 OPS0025 OPS0050
## 5316 OPS0025 OPS0053
## 5817 OPS0025 OPS0058
## 62112 OPS0025 OPS0062
## 29110 OPS0026 OPS0029
## 31111 OPS0026 OPS0031
## 37111 OPS0026 OPS0037
## 3918 OPS0026 OPS0039
## 4819 OPS0026 OPS0048
## 5118 OPS0026 OPS0051
## 5918 OPS0026 OPS0059
## 3212 OPS0027 OPS0032
## 4214 OPS0027 OPS0042
## 29111 OPS0028 OPS0029
## 30110 OPS0028 OPS0030
## 31112 OPS0028 OPS0031
## 36111 OPS0028 OPS0036
## 37112 OPS0028 OPS0037
## 3819 OPS0028 OPS0038
## 3919 OPS0028 OPS0039
## 4718 OPS0028 OPS0047
## 48110 OPS0028 OPS0048
## 5018 OPS0028 OPS0050
## 5119 OPS0028 OPS0051
## 5818 OPS0028 OPS0058
## 5919 OPS0028 OPS0059
## 6011 OPS0028 OPS0060
## 30111 OPS0029 OPS0030
## 31113 OPS0029 OPS0031
## 36112 OPS0029 OPS0036
## 37113 OPS0029 OPS0037
## 38110 OPS0029 OPS0038
## 39110 OPS0029 OPS0039
## 4112 OPS0029 OPS0041
## 4719 OPS0029 OPS0047
## 48111 OPS0029 OPS0048
## 5019 OPS0029 OPS0050
## 51110 OPS0029 OPS0051
## 5819 OPS0029 OPS0058
## 59110 OPS0029 OPS0059
## 6012 OPS0029 OPS0060
## 62113 OPS0029 OPS0062
## 31114 OPS0030 OPS0031
## 36113 OPS0030 OPS0036
## 37114 OPS0030 OPS0037
## 38111 OPS0030 OPS0038
## 39111 OPS0030 OPS0039
## 4413 OPS0030 OPS0044
## 47110 OPS0030 OPS0047
## 48112 OPS0030 OPS0048
## 4913 OPS0030 OPS0049
## 50110 OPS0030 OPS0050
## 51111 OPS0030 OPS0051
## 5512 OPS0030 OPS0055
## 58110 OPS0030 OPS0058
## 59111 OPS0030 OPS0059
## 6113 OPS0030 OPS0061
## 36114 OPS0031 OPS0036
## 37115 OPS0031 OPS0037
## 38112 OPS0031 OPS0038
## 39112 OPS0031 OPS0039
## 4113 OPS0031 OPS0041
## 4414 OPS0031 OPS0044
## 47111 OPS0031 OPS0047
## 48113 OPS0031 OPS0048
## 4914 OPS0031 OPS0049
## 50111 OPS0031 OPS0050
## 51112 OPS0031 OPS0051
## 5513 OPS0031 OPS0055
## 58111 OPS0031 OPS0058
## 59112 OPS0031 OPS0059
## 6114 OPS0031 OPS0061
## 62114 OPS0031 OPS0062
## 331 OPS0032 OPS0033
## 5212 OPS0032 OPS0052
## 62115 OPS0032 OPS0062
## 4614 OPS0033 OPS0046
## 5611 OPS0033 OPS0056
## 5317 OPS0034 OPS0053
## 62116 OPS0034 OPS0062
## 62117 OPS0035 OPS0062
## 37116 OPS0036 OPS0037
## 38113 OPS0036 OPS0038
## 39113 OPS0036 OPS0039
## 4415 OPS0036 OPS0044
## 47112 OPS0036 OPS0047
## 48114 OPS0036 OPS0048
## 4915 OPS0036 OPS0049
## 50112 OPS0036 OPS0050
## 51113 OPS0036 OPS0051
## 5514 OPS0036 OPS0055
## 58112 OPS0036 OPS0058
## 59113 OPS0036 OPS0059
## 6115 OPS0036 OPS0061
## 38114 OPS0037 OPS0038
## 39114 OPS0037 OPS0039
## 4114 OPS0037 OPS0041
## 4416 OPS0037 OPS0044
## 47113 OPS0037 OPS0047
## 48115 OPS0037 OPS0048
## 4916 OPS0037 OPS0049
## 50113 OPS0037 OPS0050
## 51114 OPS0037 OPS0051
## 5515 OPS0037 OPS0055
## 58113 OPS0037 OPS0058
## 59114 OPS0037 OPS0059
## 6116 OPS0037 OPS0061
## 62118 OPS0037 OPS0062
## 39115 OPS0038 OPS0039
## 4215 OPS0038 OPS0042
## 47114 OPS0038 OPS0047
## 48116 OPS0038 OPS0048
## 50114 OPS0038 OPS0050
## 51115 OPS0038 OPS0051
## 5516 OPS0038 OPS0055
## 5711 OPS0038 OPS0057
## 58114 OPS0038 OPS0058
## 59115 OPS0038 OPS0059
## 631 OPS0038 OPS0063
## 4115 OPS0039 OPS0041
## 4216 OPS0039 OPS0042
## 47115 OPS0039 OPS0047
## 48117 OPS0039 OPS0048
## 50115 OPS0039 OPS0050
## 51116 OPS0039 OPS0051
## 5517 OPS0039 OPS0055
## 5712 OPS0039 OPS0057
## 58115 OPS0039 OPS0058
## 59116 OPS0039 OPS0059
## 62119 OPS0039 OPS0062
## 6311 OPS0039 OPS0063
## 5213 OPS0040 OPS0052
## 48118 OPS0041 OPS0048
## 50116 OPS0041 OPS0050
## 51117 OPS0041 OPS0051
## 5612 OPS0041 OPS0056
## 59117 OPS0041 OPS0059
## 58116 OPS0042 OPS0058
## 59118 OPS0042 OPS0059
## 4917 OPS0044 OPS0049
## 5518 OPS0044 OPS0055
## 6117 OPS0044 OPS0061
## 4615 OPS0045 OPS0046
## 62120 OPS0045 OPS0062
## 5318 OPS0046 OPS0053
## 6013 OPS0046 OPS0060
## 48119 OPS0047 OPS0048
## 50117 OPS0047 OPS0050
## 51118 OPS0047 OPS0051
## 58117 OPS0047 OPS0058
## 59119 OPS0047 OPS0059
## 6118 OPS0047 OPS0061
## 6312 OPS0047 OPS0063
## 50118 OPS0048 OPS0050
## 51119 OPS0048 OPS0051
## 58118 OPS0048 OPS0058
## 59120 OPS0048 OPS0059
## 6119 OPS0048 OPS0061
## 62121 OPS0048 OPS0062
## 6313 OPS0048 OPS0063
## 5519 OPS0049 OPS0055
## 5713 OPS0049 OPS0057
## 61110 OPS0049 OPS0061
## 51120 OPS0050 OPS0051
## 5613 OPS0050 OPS0056
## 58119 OPS0050 OPS0058
## 59121 OPS0050 OPS0059
## 5614 OPS0051 OPS0056
## 58120 OPS0051 OPS0058
## 59122 OPS0051 OPS0059
## 62122 OPS0051 OPS0062
## 5319 OPS0052 OPS0053
## 6014 OPS0052 OPS0060
## 62123 OPS0053 OPS0062
## 55110 OPS0054 OPS0055
## 5714 OPS0054 OPS0057
## 5715 OPS0055 OPS0057
## 61111 OPS0055 OPS0061
## 61112 OPS0057 OPS0061
## 59123 OPS0058 OPS0059
## 62124 OPS0058 OPS0062
## 6314 OPS0058 OPS0063
## 62125 OPS0059 OPS0062
## 6315 OPS0059 OPS0063## node1 node2 OPSLabel
## 1 6239.C18E9.6 7227.FBpp0085338 OPS0001
## 2 6239.R07B7.5 7227.FBpp0088005 OPS0002
## 3 6239.Y67H2A.4a 7227.FBpp0111941 OPS0003
## 4 6239.Y22D7AL.5a.2 7227.FBpp0073290 OPS0004
## 5 6239.R07G3.5.2 7227.FBpp0070350 OPS0005
## 6 6239.MTCE.31 7227.FBpp0100177 OPS0006
## 7 6239.F42A8.2.1 7227.FBpp0085489 OPS0007
## 8 6239.H28O16.1a 7227.FBpp0071794 OPS0008
## 9 6239.C34C12.8.1 7227.FBpp0086795 OPS0009
## 10 6239.ZK370.5.1 7227.FBpp0111805 OPS0010
## 11 6239.F10D11.1.2 7227.FBpp0086226 OPS0011
## 12 6239.C34E10.6.2 7227.FBpp0305828 OPS0012
## 13 6239.M01F1.3.3 7227.FBpp0288705 OPS0013
## 14 6239.Y47G6A.8 7227.FBpp0086223 OPS0014
## 15 6239.E04A4.7.3 7227.FBpp0083137 OPS0015
## 16 6239.MTCE.21 7227.FBpp0083137 OPS0016
## 17 6239.C34B2.6.1 7227.FBpp0271918 OPS0017
## 18 6239.F13D12.4a.2 7227.FBpp0070087 OPS0018
## 19 6239.ZK1248.14 7227.FBpp0070873 OPS0019
## 20 6239.K08F11.5.2 7227.FBpp0302814 OPS0020
## 21 6239.C47G2.3.1 7227.FBpp0083078 OPS0021
## 22 6239.Y37D8A.14.2 7227.FBpp0081947 OPS0022
## 23 6239.C05G5.4.1 7227.FBpp0073010 OPS0023
## 24 6239.C03G5.1.2 7227.FBpp0085736 OPS0024
## 25 6239.R05G6.7.2 7227.FBpp0079772 OPS0025
## 26 6239.H06I04.2 7227.FBpp0076607 OPS0026
## 27 6239.C29E4.8.1 7227.FBpp0072072 OPS0027
## 28 6239.E04A4.7.3 7227.FBpp0086748 OPS0028
## 29 6239.MTCE.21 7227.FBpp0086748 OPS0029
## 30 6239.E04A4.7.3 7227.FBpp0086555 OPS0030
## 31 6239.MTCE.21 7227.FBpp0086555 OPS0031
## 32 6239.B0250.5 7227.FBpp0085821 OPS0032
## 33 6239.F02A9.4a 7227.FBpp0085460 OPS0033
## 34 6239.ZK836.2a 7227.FBpp0085117 OPS0034
## 35 6239.W02B12.9.2 7227.FBpp0084635 OPS0035
## 36 6239.E04A4.7.3 7227.FBpp0082657 OPS0036
## 37 6239.MTCE.21 7227.FBpp0082657 OPS0037
## 38 6239.E04A4.7.3 7227.FBpp0082412 OPS0038
## 39 6239.MTCE.21 7227.FBpp0082412 OPS0039
## 40 6239.ZK1128.1.2 7227.FBpp0081828 OPS0040
## 41 6239.F57B9.4b.1 7227.FBpp0081347 OPS0041
## 42 6239.F29C12.4.2 7227.FBpp0079041 OPS0042
## 43 6239.C08F8.2a 7227.FBpp0271517 OPS0043
## 44 6239.E04A4.5.2 7227.FBpp0078430 OPS0044
## 45 6239.F49E8.5.1 7227.FBpp0077414 OPS0045
## 46 6239.T08G2.3.1 7227.FBpp0076520 OPS0046
## 47 6239.E04A4.7.3 7227.FBpp0291478 OPS0047
## 48 6239.MTCE.21 7227.FBpp0291478 OPS0048
## 49 6239.DY3.1 7227.FBpp0075820 OPS0049
## 50 6239.E04A4.7.3 7227.FBpp0298344 OPS0050
## 51 6239.MTCE.21 7227.FBpp0298344 OPS0051
## 52 6239.C16A3.10a.1 7227.FBpp0074729 OPS0052
## 53 6239.F43G9.1.2 7227.FBpp0300338 OPS0053
## 54 6239.Y55F3AM.1.1 7227.FBpp0073762 OPS0054
## 55 6239.C06G3.11a 7227.FBpp0073606 OPS0055
## 56 6239.ZK652.9 7227.FBpp0073568 OPS0056
## 57 6239.T08B2.8.2 7227.FBpp0303832 OPS0057
## 58 6239.E04A4.7.3 7227.FBpp0072334 OPS0058
## 59 6239.MTCE.21 7227.FBpp0072334 OPS0059
## 60 6239.Y38F1A.6.6 7227.FBpp0071759 OPS0060
## 61 6239.Y66D12A.22.2 7227.FBpp0071593 OPS0061
## 62 6239.T20G5.2.2 7227.FBpp0070871 OPS0062
## 63 6239.B0035.16.1 7227.FBpp0070168 OPS0063## [[1]]
## from to
## 1 6239.C03G5.1.2 6239.C05G5.4.1
## 2 6239.B0250.5 6239.C16A3.10a.1
## 3 6239.C06G3.11a 6239.C18E9.6
## 4 6239.C18E9.6 6239.C29E4.8.1
## 5 6239.C29E4.8.1 6239.C34B2.6.1
## 6 6239.B0250.5 6239.C34C12.8.1
## 7 6239.C18E9.6 6239.C34C12.8.1
## 8 6239.C29E4.8.1 6239.C34C12.8.1
## 9 6239.C34B2.6.1 6239.C34C12.8.1
## 10 6239.C03G5.1.2 6239.C34E10.6.2
## 11 6239.C05G5.4.1 6239.C34E10.6.2
## 12 6239.C29E4.8.1 6239.C34E10.6.2
## 13 6239.C06G3.11a 6239.C47G2.3.1
## 14 6239.C18E9.6 6239.C47G2.3.1
## 15 6239.C34C12.8.1 6239.C47G2.3.1
## 16 6239.C06G3.11a 6239.DY3.1
## 17 6239.C18E9.6 6239.DY3.1
## 18 6239.C47G2.3.1 6239.DY3.1
## 19 6239.C06G3.11a 6239.E04A4.5.2
## 20 6239.C18E9.6 6239.E04A4.5.2
## 21 6239.C34C12.8.1 6239.E04A4.5.2
## 22 6239.C47G2.3.1 6239.E04A4.5.2
## 23 6239.DY3.1 6239.E04A4.5.2
## 24 6239.C34E10.6.2 6239.E04A4.7.3
## 25 6239.C16A3.10a.1 6239.F10D11.1.2
## 26 6239.C34B2.6.1 6239.F10D11.1.2
## 27 6239.C34C12.8.1 6239.F10D11.1.2
## 28 6239.B0250.5 6239.F13D12.4a.2
## 29 6239.C03G5.1.2 6239.F13D12.4a.2
## 30 6239.C34E10.6.2 6239.F13D12.4a.2
## 31 6239.C29E4.8.1 6239.F29C12.4.2
## 32 6239.C34C12.8.1 6239.F29C12.4.2
## 33 6239.C34E10.6.2 6239.F29C12.4.2
## 34 6239.C03G5.1.2 6239.F42A8.2.1
## 35 6239.C05G5.4.1 6239.F42A8.2.1
## 36 6239.C34E10.6.2 6239.F42A8.2.1
## 37 6239.E04A4.7.3 6239.F42A8.2.1
## 38 6239.F10D11.1.2 6239.F42A8.2.1
## 39 6239.F13D12.4a.2 6239.F42A8.2.1
## 40 6239.C03G5.1.2 6239.F43G9.1.2
## 41 6239.C05G5.4.1 6239.F43G9.1.2
## 42 6239.C16A3.10a.1 6239.F43G9.1.2
## 43 6239.C34B2.6.1 6239.F43G9.1.2
## 44 6239.C34E10.6.2 6239.F43G9.1.2
## 45 6239.F42A8.2.1 6239.F43G9.1.2
## 46 6239.C47G2.3.1 6239.F57B9.4b.1
## 47 6239.C03G5.1.2 6239.H28O16.1a
## 48 6239.C05G5.4.1 6239.H28O16.1a
## 49 6239.C29E4.8.1 6239.H28O16.1a
## 50 6239.C34E10.6.2 6239.H28O16.1a
## 51 6239.F10D11.1.2 6239.H28O16.1a
## 52 6239.F29C12.4.2 6239.H28O16.1a
## 53 6239.F42A8.2.1 6239.H28O16.1a
## 54 6239.F43G9.1.2 6239.H28O16.1a
## 55 6239.C34E10.6.2 6239.M01F1.3.3
## 56 6239.C03G5.1.2 6239.MTCE.21
## 57 6239.C34E10.6.2 6239.MTCE.21
## 58 6239.E04A4.7.3 6239.MTCE.21
## 59 6239.F42A8.2.1 6239.MTCE.21
## 60 6239.F57B9.4b.1 6239.MTCE.21
## 61 6239.H06I04.2 6239.MTCE.21
## 62 6239.H28O16.1a 6239.MTCE.21
## 63 6239.C03G5.1.2 6239.MTCE.31
## 64 6239.C34E10.6.2 6239.MTCE.31
## 65 6239.E04A4.7.3 6239.MTCE.31
## 66 6239.F42A8.2.1 6239.MTCE.31
## 67 6239.H06I04.2 6239.MTCE.31
## 68 6239.H28O16.1a 6239.MTCE.31
## 69 6239.MTCE.21 6239.MTCE.31
## 70 6239.C03G5.1.2 6239.R05G6.7.2
## 71 6239.C18E9.6 6239.R05G6.7.2
## 72 6239.C34E10.6.2 6239.R05G6.7.2
## 73 6239.C47G2.3.1 6239.R05G6.7.2
## 74 6239.E04A4.7.3 6239.R05G6.7.2
## 75 6239.F42A8.2.1 6239.R05G6.7.2
## 76 6239.H28O16.1a 6239.R05G6.7.2
## 77 6239.MTCE.31 6239.R05G6.7.2
## 78 6239.C05G5.4.1 6239.R07B7.5
## 79 6239.C06G3.11a 6239.T08B2.8.2
## 80 6239.DY3.1 6239.T08B2.8.2
## 81 6239.C05G5.4.1 6239.T08G2.3.1
## 82 6239.F02A9.4a 6239.T08G2.3.1
## 83 6239.F43G9.1.2 6239.T08G2.3.1
## 84 6239.C03G5.1.2 6239.T20G5.2.2
## 85 6239.C05G5.4.1 6239.T20G5.2.2
## 86 6239.C34B2.6.1 6239.T20G5.2.2
## 87 6239.C34E10.6.2 6239.T20G5.2.2
## 88 6239.F10D11.1.2 6239.T20G5.2.2
## 89 6239.F42A8.2.1 6239.T20G5.2.2
## 90 6239.F43G9.1.2 6239.T20G5.2.2
## 91 6239.F49E8.5.1 6239.T20G5.2.2
## 92 6239.H28O16.1a 6239.T20G5.2.2
## 93 6239.MTCE.21 6239.T20G5.2.2
## 94 6239.R05G6.7.2 6239.T20G5.2.2
## 95 6239.T20G5.2.2 6239.W02B12.9.2
## 96 6239.C03G5.1.2 6239.Y22D7AL.5a.2
## 97 6239.C18E9.6 6239.Y22D7AL.5a.2
## 98 6239.C34B2.6.1 6239.Y22D7AL.5a.2
## 99 6239.C34C12.8.1 6239.Y22D7AL.5a.2
## 100 6239.C34E10.6.2 6239.Y22D7AL.5a.2
## 101 6239.F10D11.1.2 6239.Y22D7AL.5a.2
## 102 6239.F29C12.4.2 6239.Y22D7AL.5a.2
## 103 6239.F42A8.2.1 6239.Y22D7AL.5a.2
## 104 6239.R05G6.7.2 6239.Y22D7AL.5a.2
## 105 6239.T20G5.2.2 6239.Y22D7AL.5a.2
## 106 6239.C34E10.6.2 6239.Y37D8A.14.2
## 107 6239.E04A4.7.3 6239.Y37D8A.14.2
## 108 6239.F10D11.1.2 6239.Y37D8A.14.2
## 109 6239.F42A8.2.1 6239.Y37D8A.14.2
## 110 6239.H06I04.2 6239.Y37D8A.14.2
## 111 6239.H28O16.1a 6239.Y37D8A.14.2
## 112 6239.MTCE.21 6239.Y37D8A.14.2
## 113 6239.MTCE.31 6239.Y37D8A.14.2
## 114 6239.R05G6.7.2 6239.Y37D8A.14.2
## 115 6239.T20G5.2.2 6239.Y37D8A.14.2
## 116 6239.C16A3.10a.1 6239.Y38F1A.6.6
## 117 6239.F13D12.4a.2 6239.Y38F1A.6.6
## 118 6239.T08G2.3.1 6239.Y38F1A.6.6
## 119 6239.C06G3.11a 6239.Y66D12A.22.2
## 120 6239.C18E9.6 6239.Y66D12A.22.2
## 121 6239.C34C12.8.1 6239.Y66D12A.22.2
## 122 6239.C47G2.3.1 6239.Y66D12A.22.2
## 123 6239.DY3.1 6239.Y66D12A.22.2
## 124 6239.E04A4.5.2 6239.Y66D12A.22.2
## 125 6239.T08B2.8.2 6239.Y66D12A.22.2
## 126 6239.C18E9.6 6239.ZK1248.14
## 127 6239.E04A4.7.3 6239.ZK1248.14
## 128 6239.K08F11.5.2 6239.ZK1248.14
## 129 6239.R05G6.7.2 6239.ZK1248.14
## 130 6239.C03G5.1.2 6239.ZK836.2a
## 131 6239.C05G5.4.1 6239.ZK836.2a
## 132 6239.C34E10.6.2 6239.ZK836.2a
## 133 6239.F42A8.2.1 6239.ZK836.2a
## 134 6239.F43G9.1.2 6239.ZK836.2a
## 135 6239.H28O16.1a 6239.ZK836.2a
## 136 6239.MTCE.31 6239.ZK836.2a
## 137 6239.T20G5.2.2 6239.ZK836.2a
## 138 6239.F02A9.4a 6239.ZK652.9
## 139 6239.F57B9.4b.1 6239.ZK652.9
## 140 6239.R07B7.5 6239.ZK652.9
## 141 6239.C16A3.10a.1 6239.ZK1128.1.2
##
## [[2]]
## from to
## 1 7227.FBpp0070871 7227.FBpp0070873
## 2 7227.FBpp0070087 7227.FBpp0071759
## 3 7227.FBpp0070087 7227.FBpp0071794
## 4 7227.FBpp0070871 7227.FBpp0071794
## 5 7227.FBpp0071794 7227.FBpp0072072
## 6 7227.FBpp0070168 7227.FBpp0072334
## 7 7227.FBpp0070871 7227.FBpp0072334
## 8 7227.FBpp0070871 7227.FBpp0073010
## 9 7227.FBpp0071794 7227.FBpp0073010
## 10 7227.FBpp0070871 7227.FBpp0073290
## 11 7227.FBpp0071593 7227.FBpp0073606
## 12 7227.FBpp0073606 7227.FBpp0073762
## 13 7227.FBpp0070087 7227.FBpp0074729
## 14 7227.FBpp0071759 7227.FBpp0074729
## 15 7227.FBpp0071593 7227.FBpp0075820
## 16 7227.FBpp0073606 7227.FBpp0075820
## 17 7227.FBpp0070087 7227.FBpp0076520
## 18 7227.FBpp0071759 7227.FBpp0076520
## 19 7227.FBpp0073010 7227.FBpp0076520
## 20 7227.FBpp0070871 7227.FBpp0077414
## 21 7227.FBpp0073010 7227.FBpp0077414
## 22 7227.FBpp0076520 7227.FBpp0077414
## 23 7227.FBpp0071593 7227.FBpp0078430
## 24 7227.FBpp0073606 7227.FBpp0078430
## 25 7227.FBpp0075820 7227.FBpp0078430
## 26 7227.FBpp0071794 7227.FBpp0079041
## 27 7227.FBpp0072072 7227.FBpp0079041
## 28 7227.FBpp0072334 7227.FBpp0079041
## 29 7227.FBpp0073290 7227.FBpp0079041
## 30 7227.FBpp0070871 7227.FBpp0079772
## 31 7227.FBpp0070873 7227.FBpp0079772
## 32 7227.FBpp0071794 7227.FBpp0079772
## 33 7227.FBpp0073010 7227.FBpp0079772
## 34 7227.FBpp0073290 7227.FBpp0079772
## 35 7227.FBpp0073568 7227.FBpp0081347
## 36 7227.FBpp0070871 7227.FBpp0081947
## 37 7227.FBpp0071794 7227.FBpp0081947
## 38 7227.FBpp0072072 7227.FBpp0081947
## 39 7227.FBpp0073010 7227.FBpp0081947
## 40 7227.FBpp0076607 7227.FBpp0081947
## 41 7227.FBpp0079772 7227.FBpp0081947
## 42 7227.FBpp0070168 7227.FBpp0082412
## 43 7227.FBpp0071794 7227.FBpp0082412
## 44 7227.FBpp0073606 7227.FBpp0082412
## 45 7227.FBpp0079041 7227.FBpp0082412
## 46 7227.FBpp0071593 7227.FBpp0082657
## 47 7227.FBpp0073606 7227.FBpp0082657
## 48 7227.FBpp0075820 7227.FBpp0082657
## 49 7227.FBpp0078430 7227.FBpp0082657
## 50 7227.FBpp0071593 7227.FBpp0083078
## 51 7227.FBpp0073606 7227.FBpp0083078
## 52 7227.FBpp0075820 7227.FBpp0083078
## 53 7227.FBpp0078430 7227.FBpp0083078
## 54 7227.FBpp0079772 7227.FBpp0083078
## 55 7227.FBpp0081347 7227.FBpp0083078
## 56 7227.FBpp0082657 7227.FBpp0083078
## 57 7227.FBpp0070871 7227.FBpp0085117
## 58 7227.FBpp0071794 7227.FBpp0085117
## 59 7227.FBpp0073010 7227.FBpp0085117
## 60 7227.FBpp0070873 7227.FBpp0085338
## 61 7227.FBpp0071593 7227.FBpp0085338
## 62 7227.FBpp0073606 7227.FBpp0085338
## 63 7227.FBpp0075820 7227.FBpp0085338
## 64 7227.FBpp0078430 7227.FBpp0085338
## 65 7227.FBpp0079772 7227.FBpp0085338
## 66 7227.FBpp0082657 7227.FBpp0085338
## 67 7227.FBpp0083078 7227.FBpp0085338
## 68 7227.FBpp0073568 7227.FBpp0085460
## 69 7227.FBpp0076520 7227.FBpp0085460
## 70 7227.FBpp0070087 7227.FBpp0085489
## 71 7227.FBpp0070871 7227.FBpp0085489
## 72 7227.FBpp0071794 7227.FBpp0085489
## 73 7227.FBpp0073010 7227.FBpp0085489
## 74 7227.FBpp0076607 7227.FBpp0085489
## 75 7227.FBpp0079772 7227.FBpp0085489
## 76 7227.FBpp0081947 7227.FBpp0085489
## 77 7227.FBpp0085117 7227.FBpp0085489
## 78 7227.FBpp0070087 7227.FBpp0085736
## 79 7227.FBpp0070871 7227.FBpp0085736
## 80 7227.FBpp0071794 7227.FBpp0085736
## 81 7227.FBpp0073010 7227.FBpp0085736
## 82 7227.FBpp0079772 7227.FBpp0085736
## 83 7227.FBpp0085117 7227.FBpp0085736
## 84 7227.FBpp0085489 7227.FBpp0085736
## 85 7227.FBpp0070087 7227.FBpp0085821
## 86 7227.FBpp0070871 7227.FBpp0085821
## 87 7227.FBpp0072072 7227.FBpp0085821
## 88 7227.FBpp0074729 7227.FBpp0085821
## 89 7227.FBpp0085460 7227.FBpp0085821
## 90 7227.FBpp0070871 7227.FBpp0086226
## 91 7227.FBpp0071794 7227.FBpp0086226
## 92 7227.FBpp0072072 7227.FBpp0086226
## 93 7227.FBpp0073010 7227.FBpp0086226
## 94 7227.FBpp0073290 7227.FBpp0086226
## 95 7227.FBpp0079772 7227.FBpp0086226
## 96 7227.FBpp0081947 7227.FBpp0086226
## 97 7227.FBpp0085489 7227.FBpp0086226
## 98 7227.FBpp0085736 7227.FBpp0086226
## 99 7227.FBpp0071593 7227.FBpp0086555
## 100 7227.FBpp0073606 7227.FBpp0086555
## 101 7227.FBpp0075820 7227.FBpp0086555
## 102 7227.FBpp0078430 7227.FBpp0086555
## 103 7227.FBpp0079772 7227.FBpp0086555
## 104 7227.FBpp0083078 7227.FBpp0086555
## 105 7227.FBpp0085338 7227.FBpp0086555
## 106 7227.FBpp0070087 7227.FBpp0086748
## 107 7227.FBpp0071759 7227.FBpp0086748
## 108 7227.FBpp0085489 7227.FBpp0086748
## 109 7227.FBpp0086226 7227.FBpp0086748
## 110 7227.FBpp0071593 7227.FBpp0086795
## 111 7227.FBpp0073290 7227.FBpp0086795
## 112 7227.FBpp0078430 7227.FBpp0086795
## 113 7227.FBpp0079041 7227.FBpp0086795
## 114 7227.FBpp0082657 7227.FBpp0086795
## 115 7227.FBpp0083078 7227.FBpp0086795
## 116 7227.FBpp0085338 7227.FBpp0086795
## 117 7227.FBpp0085821 7227.FBpp0086795
## 118 7227.FBpp0086226 7227.FBpp0086795
## 119 7227.FBpp0073010 7227.FBpp0088005
## 120 7227.FBpp0073568 7227.FBpp0088005
## 121 7227.FBpp0070871 7227.FBpp0100177
## 122 7227.FBpp0071794 7227.FBpp0100177
## 123 7227.FBpp0076520 7227.FBpp0100177
## 124 7227.FBpp0076607 7227.FBpp0100177
## 125 7227.FBpp0079772 7227.FBpp0100177
## 126 7227.FBpp0081947 7227.FBpp0100177
## 127 7227.FBpp0085117 7227.FBpp0100177
## 128 7227.FBpp0085489 7227.FBpp0100177
## 129 7227.FBpp0085736 7227.FBpp0100177
## 130 7227.FBpp0076520 7227.FBpp0111805
## 131 7227.FBpp0073290 7227.FBpp0271918
## 132 7227.FBpp0086795 7227.FBpp0271918
## 133 7227.FBpp0070168 7227.FBpp0291478
## 134 7227.FBpp0071593 7227.FBpp0291478
## 135 7227.FBpp0079772 7227.FBpp0291478
## 136 7227.FBpp0082412 7227.FBpp0291478
## 137 7227.FBpp0070871 7227.FBpp0300338
## 138 7227.FBpp0071794 7227.FBpp0300338
## 139 7227.FBpp0073010 7227.FBpp0300338
## 140 7227.FBpp0076520 7227.FBpp0300338
## 141 7227.FBpp0079772 7227.FBpp0300338
## 142 7227.FBpp0085117 7227.FBpp0300338
## 143 7227.FBpp0085489 7227.FBpp0300338
## 144 7227.FBpp0085736 7227.FBpp0300338
## 145 7227.FBpp0271918 7227.FBpp0300338
## 146 7227.FBpp0070873 7227.FBpp0302814
## 147 7227.FBpp0075820 7227.FBpp0302814
## 148 7227.FBpp0071593 7227.FBpp0303832
## 149 7227.FBpp0073606 7227.FBpp0303832
## 150 7227.FBpp0073762 7227.FBpp0303832
## 151 7227.FBpp0081947 7227.FBpp0303832
## 152 7227.FBpp0082412 7227.FBpp0303832
## 153 7227.FBpp0070871 7227.FBpp0305828
## 154 7227.FBpp0071794 7227.FBpp0305828
## 155 7227.FBpp0072072 7227.FBpp0305828
## 156 7227.FBpp0073010 7227.FBpp0305828
## 157 7227.FBpp0073290 7227.FBpp0305828
## 158 7227.FBpp0079041 7227.FBpp0305828
## 159 7227.FBpp0079772 7227.FBpp0305828
## 160 7227.FBpp0081947 7227.FBpp0305828
## 161 7227.FBpp0085117 7227.FBpp0305828
## 162 7227.FBpp0085489 7227.FBpp0305828
## 163 7227.FBpp0085736 7227.FBpp0305828
## 164 7227.FBpp0086226 7227.FBpp0305828
## 165 7227.FBpp0100177 7227.FBpp0305828
## 166 7227.FBpp0300338 7227.FBpp0305828
## 167 7227.FBpp0073568 7227.FBpp0298344
## 168 7227.FBpp0081347 7227.FBpp0298344## from to
## 1 6239.C03G5.1.2 6239.C05G5.4.1
## 2 6239.B0250.5 6239.C16A3.10a.1
## 3 6239.C06G3.11a 6239.C18E9.6
## 4 6239.C18E9.6 6239.C29E4.8.1
## 5 6239.C29E4.8.1 6239.C34B2.6.1
## 6 6239.B0250.5 6239.C34C12.8.1
## 7 6239.C18E9.6 6239.C34C12.8.1
## 8 6239.C29E4.8.1 6239.C34C12.8.1
## 9 6239.C34B2.6.1 6239.C34C12.8.1
## 10 6239.C03G5.1.2 6239.C34E10.6.2
## 11 6239.C05G5.4.1 6239.C34E10.6.2
## 12 6239.C29E4.8.1 6239.C34E10.6.2
## 13 6239.C06G3.11a 6239.C47G2.3.1
## 14 6239.C18E9.6 6239.C47G2.3.1
## 15 6239.C34C12.8.1 6239.C47G2.3.1
## 16 6239.C06G3.11a 6239.DY3.1
## 17 6239.C18E9.6 6239.DY3.1
## 18 6239.C47G2.3.1 6239.DY3.1
## 19 6239.C06G3.11a 6239.E04A4.5.2
## 20 6239.C18E9.6 6239.E04A4.5.2
## 21 6239.C34C12.8.1 6239.E04A4.5.2
## 22 6239.C47G2.3.1 6239.E04A4.5.2
## 23 6239.DY3.1 6239.E04A4.5.2
## 24 6239.C34E10.6.2 6239.E04A4.7.3
## 25 6239.C16A3.10a.1 6239.F10D11.1.2
## 26 6239.C34B2.6.1 6239.F10D11.1.2
## 27 6239.C34C12.8.1 6239.F10D11.1.2
## 28 6239.B0250.5 6239.F13D12.4a.2
## 29 6239.C03G5.1.2 6239.F13D12.4a.2
## 30 6239.C34E10.6.2 6239.F13D12.4a.2
## 31 6239.C29E4.8.1 6239.F29C12.4.2
## 32 6239.C34C12.8.1 6239.F29C12.4.2
## 33 6239.C34E10.6.2 6239.F29C12.4.2
## 34 6239.C03G5.1.2 6239.F42A8.2.1
## 35 6239.C05G5.4.1 6239.F42A8.2.1
## 36 6239.C34E10.6.2 6239.F42A8.2.1
## 37 6239.E04A4.7.3 6239.F42A8.2.1
## 38 6239.F10D11.1.2 6239.F42A8.2.1
## 39 6239.F13D12.4a.2 6239.F42A8.2.1
## 40 6239.C03G5.1.2 6239.F43G9.1.2
## 41 6239.C05G5.4.1 6239.F43G9.1.2
## 42 6239.C16A3.10a.1 6239.F43G9.1.2
## 43 6239.C34B2.6.1 6239.F43G9.1.2
## 44 6239.C34E10.6.2 6239.F43G9.1.2
## 45 6239.F42A8.2.1 6239.F43G9.1.2
## 46 6239.C47G2.3.1 6239.F57B9.4b.1
## 47 6239.C03G5.1.2 6239.H28O16.1a
## 48 6239.C05G5.4.1 6239.H28O16.1a
## 49 6239.C29E4.8.1 6239.H28O16.1a
## 50 6239.C34E10.6.2 6239.H28O16.1a
## 51 6239.F10D11.1.2 6239.H28O16.1a
## 52 6239.F29C12.4.2 6239.H28O16.1a
## 53 6239.F42A8.2.1 6239.H28O16.1a
## 54 6239.F43G9.1.2 6239.H28O16.1a
## 55 6239.C34E10.6.2 6239.M01F1.3.3
## 56 6239.C03G5.1.2 6239.MTCE.21
## 57 6239.C34E10.6.2 6239.MTCE.21
## 58 6239.E04A4.7.3 6239.MTCE.21
## 59 6239.F42A8.2.1 6239.MTCE.21
## 60 6239.F57B9.4b.1 6239.MTCE.21
## 61 6239.H06I04.2 6239.MTCE.21
## 62 6239.H28O16.1a 6239.MTCE.21
## 63 6239.C03G5.1.2 6239.MTCE.31
## 64 6239.C34E10.6.2 6239.MTCE.31
## 65 6239.E04A4.7.3 6239.MTCE.31
## 66 6239.F42A8.2.1 6239.MTCE.31
## 67 6239.H06I04.2 6239.MTCE.31
## 68 6239.H28O16.1a 6239.MTCE.31
## 69 6239.MTCE.21 6239.MTCE.31
## 70 6239.C03G5.1.2 6239.R05G6.7.2
## 71 6239.C18E9.6 6239.R05G6.7.2
## 72 6239.C34E10.6.2 6239.R05G6.7.2
## 73 6239.C47G2.3.1 6239.R05G6.7.2
## 74 6239.E04A4.7.3 6239.R05G6.7.2
## 75 6239.F42A8.2.1 6239.R05G6.7.2
## 76 6239.H28O16.1a 6239.R05G6.7.2
## 77 6239.MTCE.31 6239.R05G6.7.2
## 78 6239.C05G5.4.1 6239.R07B7.5
## 79 6239.C06G3.11a 6239.T08B2.8.2
## 80 6239.DY3.1 6239.T08B2.8.2
## 81 6239.C05G5.4.1 6239.T08G2.3.1
## 82 6239.F02A9.4a 6239.T08G2.3.1
## 83 6239.F43G9.1.2 6239.T08G2.3.1
## 84 6239.C03G5.1.2 6239.T20G5.2.2
## 85 6239.C05G5.4.1 6239.T20G5.2.2
## 86 6239.C34B2.6.1 6239.T20G5.2.2
## 87 6239.C34E10.6.2 6239.T20G5.2.2
## 88 6239.F10D11.1.2 6239.T20G5.2.2
## 89 6239.F42A8.2.1 6239.T20G5.2.2
## 90 6239.F43G9.1.2 6239.T20G5.2.2
## 91 6239.F49E8.5.1 6239.T20G5.2.2
## 92 6239.H28O16.1a 6239.T20G5.2.2
## 93 6239.MTCE.21 6239.T20G5.2.2
## 94 6239.R05G6.7.2 6239.T20G5.2.2
## 95 6239.T20G5.2.2 6239.W02B12.9.2
## 96 6239.C03G5.1.2 6239.Y22D7AL.5a.2
## 97 6239.C18E9.6 6239.Y22D7AL.5a.2
## 98 6239.C34B2.6.1 6239.Y22D7AL.5a.2
## 99 6239.C34C12.8.1 6239.Y22D7AL.5a.2
## 100 6239.C34E10.6.2 6239.Y22D7AL.5a.2
## 101 6239.F10D11.1.2 6239.Y22D7AL.5a.2
## 102 6239.F29C12.4.2 6239.Y22D7AL.5a.2
## 103 6239.F42A8.2.1 6239.Y22D7AL.5a.2
## 104 6239.R05G6.7.2 6239.Y22D7AL.5a.2
## 105 6239.T20G5.2.2 6239.Y22D7AL.5a.2
## 106 6239.C34E10.6.2 6239.Y37D8A.14.2
## 107 6239.E04A4.7.3 6239.Y37D8A.14.2
## 108 6239.F10D11.1.2 6239.Y37D8A.14.2
## 109 6239.F42A8.2.1 6239.Y37D8A.14.2
## 110 6239.H06I04.2 6239.Y37D8A.14.2
## 111 6239.H28O16.1a 6239.Y37D8A.14.2
## 112 6239.MTCE.21 6239.Y37D8A.14.2
## 113 6239.MTCE.31 6239.Y37D8A.14.2
## 114 6239.R05G6.7.2 6239.Y37D8A.14.2
## 115 6239.T20G5.2.2 6239.Y37D8A.14.2
## 116 6239.C16A3.10a.1 6239.Y38F1A.6.6
## 117 6239.F13D12.4a.2 6239.Y38F1A.6.6
## 118 6239.T08G2.3.1 6239.Y38F1A.6.6
## 119 6239.C06G3.11a 6239.Y66D12A.22.2
## 120 6239.C18E9.6 6239.Y66D12A.22.2
## 121 6239.C34C12.8.1 6239.Y66D12A.22.2
## 122 6239.C47G2.3.1 6239.Y66D12A.22.2
## 123 6239.DY3.1 6239.Y66D12A.22.2
## 124 6239.E04A4.5.2 6239.Y66D12A.22.2
## 125 6239.T08B2.8.2 6239.Y66D12A.22.2
## 126 6239.C18E9.6 6239.ZK1248.14
## 127 6239.E04A4.7.3 6239.ZK1248.14
## 128 6239.K08F11.5.2 6239.ZK1248.14
## 129 6239.R05G6.7.2 6239.ZK1248.14
## 130 6239.C03G5.1.2 6239.ZK836.2a
## 131 6239.C05G5.4.1 6239.ZK836.2a
## 132 6239.C34E10.6.2 6239.ZK836.2a
## 133 6239.F42A8.2.1 6239.ZK836.2a
## 134 6239.F43G9.1.2 6239.ZK836.2a
## 135 6239.H28O16.1a 6239.ZK836.2a
## 136 6239.MTCE.31 6239.ZK836.2a
## 137 6239.T20G5.2.2 6239.ZK836.2a
## 138 6239.F02A9.4a 6239.ZK652.9
## 139 6239.F57B9.4b.1 6239.ZK652.9
## 140 6239.R07B7.5 6239.ZK652.9
## 141 6239.C16A3.10a.1 6239.ZK1128.1.2## [[1]]
## UNIPROT_AC STRING_id
## 1 Q9XTI0 6239.B0250.5
## 2 Q22347 6239.T08G2.3.1
## 3 Q9XXK1 6239.H28O16.1a
## 4 P46561 6239.C34E10.6.2
## 5 P50140 6239.Y22D7AL.5a.2
## 6 P34575 6239.T20G5.2.2
## 7 Q8I7J4 6239.F57B9.4b.1
## 8 P34666 6239.ZK652.9
## 9 P24894 6239.MTCE.31
## 10 P55954 6239.Y37D8A.14.2
## 11 P24890 6239.MTCE.21
## 12 P19974 6239.E04A4.7.3
## 13 Q09508 6239.C03G5.1.2
## 14 Q09545 6239.F42A8.2.1
## 15 Q23629 6239.ZK836.2a
## 16 Q27257 6239.F49E8.5.1
## 17 Q9XV52 6239.F29C12.4.2
## 18 Q9N3T2 6239.Y47G6A.8
## 19 Q23424 6239.ZK1248.14
## 20 Q18421 6239.C34C12.8.1
## 21 Q9U2M4 6239.Y38F1A.6.6
## 22 Q93714 6239.F43G9.1.2
## 23 P34346 6239.C29E4.8.1
## 24 Q21795 6239.R07B7.5
## 25 Q21452 6239.M01F1.3.3
## 26 O44952 6239.C34B2.6.1
## 27 P34385 6239.F02A9.4a
## 28 Q23125 6239.W02B12.9.2
## 29 Q95PZ2 6239.Y67H2A.4a
## 30 Q94263 6239.K08F11.5.2
## 31 P52713 6239.F13D12.4a.2
## 32 Q17440 6239.B0035.16.1
## 33 Q09644 6239.ZK1128.1.2
## 34 Q18040 6239.C16A3.10a.1
## 35 Q02332 6239.ZK370.5.1
## 36 Q09422 6239.R07G3.5.2
## 37 Q9GYS9 6239.T08B2.8.2
## 38 Q9N361 6239.Y55F3AM.1.1
## 39 P31161 6239.F10D11.1.2
## 40 P53596 6239.C05G5.4.1
## 41 Q9N5N8 6239.H06I04.2
## 42 Q17828 6239.C08F8.2a
## 43 Q9Y0V6 6239.Y66D12A.22.2
## 44 O45319 6239.DY3.1
## 45 O44477 6239.E04A4.5.2
## 46 Q9NAQ9 6239.C47G2.3.1
## 47 Q17754 6239.C06G3.11a
## 48 Q18090 6239.C18E9.6
## 49 Q21752 6239.R05G6.7.2
##
## [[2]]
## UNIPROT_AC STRING_id
## 1 Q9V8M5 7227.FBpp0085821
## 2 Q9VSA3 7227.FBpp0076520
## 3 P35381 7227.FBpp0071794
## 4 Q05825 7227.FBpp0305828
## 5 O02649 7227.FBpp0073290
## 6 Q9W401 7227.FBpp0070871
## 7 Q9VHS7 7227.FBpp0081347
## 8 Q9VYF8 7227.FBpp0073568
## 9 P00408 7227.FBpp0100177
## 10 Q94514 7227.FBpp0081947
## 11 Q9VVG6 7227.FBpp0298344
## 12 Q9V6U9 7227.FBpp0086748
## 13 Q7KSC4 7227.FBpp0083137
## 14 Q9VFJ2 7227.FBpp0082412
## 15 Q9V784 7227.FBpp0086555
## 16 Q9W107 7227.FBpp0072334
## 17 Q9VTM5 7227.FBpp0291478
## 18 Q9VF08 7227.FBpp0082657
## 19 Q94523 7227.FBpp0085736
## 20 P21914 7227.FBpp0085489
## 21 Q9VA02 7227.FBpp0085117
## 22 Q9VQG4 7227.FBpp0077414
## 23 Q9VM33 7227.FBpp0079041
## 24 Q7K7A9 7227.FBpp0086223
## 25 Q7YU24 7227.FBpp0070873
## 26 P48604 7227.FBpp0086795
## 27 Q9W265 7227.FBpp0071759
## 28 Q9VWH4 7227.FBpp0300338
## 29 Q9U915 7227.FBpp0072072
## 30 A1Z746 7227.FBpp0088005
## 31 Q7JQW6 7227.FBpp0288705
## 32 Q7KUT2 7227.FBpp0271918
## 33 Q9V9A7 7227.FBpp0085460
## 34 Q9VAY3 7227.FBpp0084635
## 35 A2VEI2 7227.FBpp0111941
## 36 Q8IMX7 7227.FBpp0302814
## 37 Q7KW39 7227.FBpp0070087
## 38 Q9W5B6 7227.FBpp0070168
## 39 Q9VGR2 7227.FBpp0081828
## 40 Q9VW26 7227.FBpp0074729
## 41 P91622 7227.FBpp0111805
## 42 O46084 7227.FBpp0070350
## 43 Q9W021 7227.FBpp0303832
## 44 Q9VY28 7227.FBpp0073762
## 45 Q00637 7227.FBpp0086226
## 46 Q94522 7227.FBpp0073010
## 47 Q9U4F3 7227.FBpp0076607
## 48 Q9VN03 7227.FBpp0271517
## 49 Q9W2D6 7227.FBpp0071593
## 50 Q9VTN3 7227.FBpp0075820
## 51 Q9VNA0 7227.FBpp0078430
## 52 Q8IN78 7227.FBpp0083078
## 53 Q9VYD7 7227.FBpp0073606
## 54 A1Z6L1 7227.FBpp0085338
## 55 Q94920 7227.FBpp0079772## UNIPROT_AC STRING_id
## 1 Q9V8M5 7227.FBpp0085821
## 2 Q9VSA3 7227.FBpp0076520
## 3 P35381 7227.FBpp0071794
## 4 Q05825 7227.FBpp0305828
## 5 O02649 7227.FBpp0073290
## 6 Q9W401 7227.FBpp0070871
## 7 Q9VHS7 7227.FBpp0081347
## 8 Q9VYF8 7227.FBpp0073568
## 9 P00408 7227.FBpp0100177
## 10 Q94514 7227.FBpp0081947
## 11 Q9VVG6 7227.FBpp0298344
## 12 Q9V6U9 7227.FBpp0086748
## 13 Q7KSC4 7227.FBpp0083137
## 14 Q9VFJ2 7227.FBpp0082412
## 15 Q9V784 7227.FBpp0086555
## 16 Q9W107 7227.FBpp0072334
## 17 Q9VTM5 7227.FBpp0291478
## 18 Q9VF08 7227.FBpp0082657
## 19 Q94523 7227.FBpp0085736
## 20 P21914 7227.FBpp0085489
## 21 Q9VA02 7227.FBpp0085117
## 22 Q9VQG4 7227.FBpp0077414
## 23 Q9VM33 7227.FBpp0079041
## 24 Q7K7A9 7227.FBpp0086223
## 25 Q7YU24 7227.FBpp0070873
## 26 P48604 7227.FBpp0086795
## 27 Q9W265 7227.FBpp0071759
## 28 Q9VWH4 7227.FBpp0300338
## 29 Q9U915 7227.FBpp0072072
## 30 A1Z746 7227.FBpp0088005
## 31 Q7JQW6 7227.FBpp0288705
## 32 Q7KUT2 7227.FBpp0271918
## 33 Q9V9A7 7227.FBpp0085460
## 34 Q9VAY3 7227.FBpp0084635
## 35 A2VEI2 7227.FBpp0111941
## 36 Q8IMX7 7227.FBpp0302814
## 37 Q7KW39 7227.FBpp0070087
## 38 Q9W5B6 7227.FBpp0070168
## 39 Q9VGR2 7227.FBpp0081828
## 40 Q9VW26 7227.FBpp0074729
## 41 P91622 7227.FBpp0111805
## 42 O46084 7227.FBpp0070350
## 43 Q9W021 7227.FBpp0303832
## 44 Q9VY28 7227.FBpp0073762
## 45 Q00637 7227.FBpp0086226
## 46 Q94522 7227.FBpp0073010
## 47 Q9U4F3 7227.FBpp0076607
## 48 Q9VN03 7227.FBpp0271517
## 49 Q9W2D6 7227.FBpp0071593
## 50 Q9VTN3 7227.FBpp0075820
## 51 Q9VNA0 7227.FBpp0078430
## 52 Q8IN78 7227.FBpp0083078
## 53 Q9VYD7 7227.FBpp0073606
## 54 A1Z6L1 7227.FBpp0085338
## 55 Q94920 7227.FBpp0079772