phastCons100way.UCSC.hg19

DOI: 10.18129/B9.bioc.phastCons100way.UCSC.hg19    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see phastCons100way.UCSC.hg19.

UCSC phastCons conservation scores for hg19

Bioconductor version: 3.9

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phastCons100way.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version	3.7.2
License	Artistic-2.0
Depends	R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports	utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	RareVariantVis
Suggests Me	ATACseqQC, GenomicScores, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	phastCons100way.UCSC.hg19_3.7.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	https://bioconductor.org/packages/phastCons100way.UCSC.hg19/
Package Downloads Report	Download Stats