pathprintGEOData

DOI: 10.18129/B9.bioc.pathprintGEOData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pathprintGEOData.

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

Bioconductor version: 3.9

Pathway Fingerprint vectors that have been pre-calculated for ~390,000 publicly available arrays from the GEO corpus, spanning 6 species and 31 platforms. All data are accompanied by their associated metadata.

Author: Gabriel Altschuler, Sokratis Kariotis

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathprintGEOData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathprintGEOData")

 

PDF	R Script	pathprintGEOData
PDF		Reference Manual

Details

biocViews	Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExpressionData, GEO, Genome, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data, OneChannelData, PathwayInteractionDatabase, Rattus_norvegicus_Data, SequencingData, TwoChannelData
Version	1.14.0
License	GPL
Depends	R (>= 3.4)
Imports
LinkingTo
Suggests	pathprint, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	pathprint
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pathprintGEOData_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/pathprintGEOData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pathprintGEOData
Package Short Url	https://bioconductor.org/packages/pathprintGEOData/
Package Downloads Report	Download Stats