seqCNA.annot

DOI: 10.18129/B9.bioc.seqCNA.annot    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see seqCNA.annot.

Annotation for the copy number analysis of deep sequencing cancer data with seqCNA

Bioconductor version: 3.9

Provides annotation on GC content, mappability and genomic features for various genomes

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqCNA.annot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariationData, ExperimentData, Genome
Version	1.20.0
License	GPL-3
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	seqCNA
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqCNA.annot_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/seqCNA.annot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/seqCNA.annot
Package Short Url	https://bioconductor.org/packages/seqCNA.annot/
Package Downloads Report	Download Stats