geyser
This is the development version of geyser; to use it, please install the devel version of Bioconductor.
Gene Expression displaYer of SummarizedExperiment in R
Bioconductor version: Development (3.21)
Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view (gene) expression grouped from the sample metadata columns (in the `colData` slot). Feature expression can either be viewed with a box plot or a heatmap.
Author: David McGaughey [aut, cre] (ORCID:
Maintainer: David McGaughey <mcgaughey at gmail.com>
citation("geyser")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("geyser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geyser")| Gene_Expression_Plotting_GUI | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, GeneExpression, ShinyApps, Software |
| Version | 0.99.8 |
| In Bioconductor since | BioC 3.21 (R-4.5) |
| License | CC0 |
| Depends | R (>= 3.5.0) |
| Imports | bslib (>= 0.6.0), BiocStyle, ComplexHeatmap, dplyr, DT, ggbeeswarm, ggplot2, htmltools, magrittr, shiny, SummarizedExperiment, tibble, tidyselect, tidyr |
| System Requirements | |
| URL | https://github.com/davemcg/geyser |
| Bug Reports | https://github.com/davemcg/geyser/issues |
See More
| Suggests | airway, knitr, DESeq2, recount3, rmarkdown, stringr, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geyser_0.99.8.tar.gz |
| Windows Binary (x86_64) | geyser_0.99.8.zip |
| macOS Binary (x86_64) | geyser_0.99.8.tgz |
| macOS Binary (arm64) | geyser_0.99.8.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/geyser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geyser |
| Bioc Package Browser | https://code.bioconductor.org/browse/geyser/ |
| Package Short Url | https://bioconductor.org/packages/geyser/ |
| Package Downloads Report | Download Stats |