consensus

Cross-platform consensus analysis of genomic measurements via interlaboratory testing method


Bioconductor version: Release (3.19)

An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.

Author: Tim Peters

Maintainer: Tim Peters <t.peters at garvan.org.au>

Citation (from within R, enter citation("consensus")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("consensus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("consensus")
Fitting and visualising row-linear models with \texttt{consensus} PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, GeneExpression, Microarray, QualityControl, RNASeq, Regression, Software
Version 1.22.0
In Bioconductor since BioC 3.8 (R-3.5) (6 years)
License BSD_3_clause + file LICENSE
Depends R (>= 3.5), RColorBrewer
Imports matrixStats, gplots, grDevices, methods, graphics, stats, utils
System Requirements
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Suggests knitr, RUnit, rmarkdown, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package consensus_1.22.0.tar.gz
Windows Binary consensus_1.22.0.zip
macOS Binary (x86_64) consensus_1.22.0.tgz
macOS Binary (arm64) consensus_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/consensus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/consensus
Bioc Package Browser https://code.bioconductor.org/browse/consensus/
Package Short Url https://bioconductor.org/packages/consensus/
Package Downloads Report Download Stats