drawProteins

Package to Draw Protein Schematics from Uniprot API output


Bioconductor version: Release (3.19)

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Citation (from within R, enter citation("drawProteins")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drawProteins")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")
Using drawProteins HTML R Script
Using extract_transcripts in drawProteins HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews FunctionalPrediction, Proteomics, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6.5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports ggplot2, httr, dplyr, readr, tidyr
System Requirements
URL https://github.com/brennanpincardiff/drawProteins
Bug Reports https://github.com/brennanpincardiff/drawProteins/issues/new
See More
Suggests covr, testthat, knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me factR
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package drawProteins_1.24.0.tar.gz
Windows Binary drawProteins_1.24.0.zip
macOS Binary (x86_64) drawProteins_1.24.0.tgz
macOS Binary (arm64) drawProteins_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/drawProteins
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/drawProteins
Bioc Package Browser https://code.bioconductor.org/browse/drawProteins/
Package Short Url https://bioconductor.org/packages/drawProteins/
Package Downloads Report Download Stats