ibh

Interaction Based Homogeneity for Evaluating Gene Lists


Bioconductor version: Release (3.19)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("ibh")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ibh")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ibh")
ibh PDF R Script
Reference Manual PDF

Details

biocViews DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version 1.52.0
In Bioconductor since BioC 2.8 (R-2.13) (13.5 years)
License GPL (>= 2)
Depends simpIntLists
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ibh_1.52.0.tar.gz
Windows Binary (x86_64) ibh_1.52.0.zip (64-bit only)
macOS Binary (x86_64) ibh_1.52.0.tgz
macOS Binary (arm64) ibh_1.52.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ibh
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ibh
Bioc Package Browser https://code.bioconductor.org/browse/ibh/
Package Short Url https://bioconductor.org/packages/ibh/
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