To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

In most cases, you don't need to download the package archive at all.

AnnotationForge

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see AnnotationForge.

Code for Building Annotation Database Packages

Bioconductor version: 3.3

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationForge")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationForge")

PDF	R Script	AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF	R Script	Creating probe packages
PDF	R Script	SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML	R Script	Making New Organism Packages
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Infrastructure, Software
Version	1.14.2
In Bioconductor since	BioC 2.11 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), AnnotationDbi(>= 1.33.14)
Imports	DBI, RSQLite, XML, S4Vectors
LinkingTo
Suggests	RCurl, biomaRt, httr, GenomeInfoDb, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db, RSQLite, XML, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats
Suggests Me	AnnotationDbi, AnnotationHub
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	AnnotationForge_1.14.2.tar.gz
Windows Binary	AnnotationForge_1.14.2.zip
Mac OS X 10.9 (Mavericks)	AnnotationForge_1.14.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AnnotationForge/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/AnnotationForge/
Package Downloads Report	Download Stats

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