To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOstats")

In most cases, you don't need to download the package archive at all.

GOstats

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see GOstats.

Tools for manipulating GO and microarrays.

Bioconductor version: 3.3

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GOstats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GOstats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOstats")

PDF	R Script	Hypergeometric tests for less common model organisms
PDF	R Script	Hypergeometric Tests Using GOstats
PDF	R Script	Visualizing Data Using GOstats
PDF		Reference Manual

Details

biocViews	Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version	2.38.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports	methods, stats, stats4, AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), AnnotationForge
LinkingTo
Suggests	hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	MineICA, RDAVIDWebService
Imports Me	affycoretools, attract, categoryCompare, facopy, mvGST, pcaExplorer, ProCoNA, ReportingTools, systemPipeR
Suggests Me	BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, miRLAB, MLP, MmPalateMiRNA, neaGUI, oneChannelGUI, phenoDist, qpgraph, RnBeads, safe
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GOstats_2.38.1.tar.gz
Windows Binary	GOstats_2.38.1.zip
Mac OS X 10.9 (Mavericks)	GOstats_2.38.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GOstats/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/GOstats/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

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Workflows for learning and use.
Course and conference material.
Videos.
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