To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

In most cases, you don't need to download the package archive at all.

GSEABase

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see GSEABase.

Gene set enrichment data structures and methods

Bioconductor version: 3.3

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

Author: Martin Morgan, Seth Falcon, Robert Gentleman

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GSEABase")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSEABase")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEABase")

biocViews	GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software
Version	1.34.1
In Bioconductor since	BioC 2.1 (R-2.6) (9 years)
License	Artistic-2.0
Depends	R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2)
Imports	AnnotationDbi, XML
LinkingTo
Suggests	hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools
SystemRequirements
Enhances
URL
Depends On Me	AGDEX, BicARE, cpvSNP, EnrichmentBrowser, gCMAP, GSVAdata, npGSEA, PROMISE, splineTCDiffExpr, splineTimeR
Imports Me	canceR, Category, categoryCompare, cellHTS2, clusterProfiler, gCMAPWeb, GSRI, GSVA, HTSanalyzeR, mogsa, oppar, PCpheno, phenoTest, PROMISE, ReportingTools
Suggests Me	BiocCaseStudies, gage, GlobalAncova, globaltest, GOstats, GSAR, GSEAlm, PGSEA, phenoTest
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GSEABase_1.34.1.tar.gz
Windows Binary	GSEABase_1.34.1.zip
Mac OS X 10.9 (Mavericks)	GSEABase_1.34.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GSEABase/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/GSEABase/
Package Downloads Report	Download Stats

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