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mtbls2
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MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)
Bioconductor version: Release (3.5)
Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.
Author: Steffen Neumann <sneumann at ipb-halle.de>
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
Citation (from within R,
enter citation("mtbls2")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mtbls2")
Documentation
| HTML | R Script | MTBLS2 Processing and Analysis with xcms, CAMERA and export to MetaboLights |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ExperimentData, MassSpectrometryData, RepositoryData |
| Version | 1.6.0 |
| License | CC0 |
| Depends | R (>= 2.10) |
| Imports | |
| LinkingTo | |
| Suggests | xcms(>= 1.43.3), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp |
| SystemRequirements | |
| Enhances | |
| URL | http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2 |
| Depends On Me | |
| Imports Me | |
| Suggests Me | IPO, yamss |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mtbls2_1.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/mtbls2 |
| Package Short Url | http://bioconductor.org/packages/mtbls2/ |
| Package Downloads Report | Download Stats |
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