BiocSklearn

DOI: 10.18129/B9.bioc.BiocSklearn    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BiocSklearn.

interface to python sklearn via Rstudio reticulate

Bioconductor version: 3.9

This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocSklearn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSklearn")

 

HTML	R Script	BiocSklearn overview
PDF		Reference Manual

Details

biocViews	DimensionReduction, Infrastructure, Software, StatisticalMethod
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), reticulate, methods, SummarizedExperiment, knitr
Imports	BBmisc
LinkingTo
Suggests	testthat, restfulSE, HDF5Array, BiocStyle
SystemRequirements	python (>= 2.7), sklearn, numpy, pandas, h5py
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocSklearn_1.6.0.tar.gz
Windows Binary	BiocSklearn_1.6.0.zip
Mac OS X 10.11 (El Capitan)	BiocSklearn_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocSklearn
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocSklearn
Package Short Url	https://bioconductor.org/packages/BiocSklearn/
Package Downloads Report	Download Stats