restfulSE

DOI: 10.18129/B9.bioc.restfulSE    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see restfulSE.

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

Bioconductor version: 3.9

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("restfulSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("restfulSE")

 

PDF	R Script	restfulSE -- experiments with SE interface to remote HDF5
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics
Version	1.6.1
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	Artistic-2.0
Depends	R (>= 3.6), SummarizedExperiment, DelayedArray
Imports	utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang
LinkingTo
Suggests	knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle, restfulSEData
SystemRequirements
Enhances
URL
Depends On Me	tenXplore
Imports Me
Suggests Me	BiocOncoTK, BiocSklearn
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	restfulSE_1.6.1.tar.gz
Windows Binary	restfulSE_1.6.1.zip
Mac OS X 10.11 (El Capitan)	restfulSE_1.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/restfulSE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/restfulSE
Package Short Url	https://bioconductor.org/packages/restfulSE/
Package Downloads Report	Download Stats