flowClust

DOI: 10.18129/B9.bioc.flowClust    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see flowClust.

Clustering for Flow Cytometry

Bioconductor version: 3.9

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo <raph at stat.ubc.ca>, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <gfinak at fhcrc.org>

Maintainer: Greg Finak <gfinak at fhcrc.org>, Mike Jiang <wjiang2 at fhcrc.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")

 

HTML	R Script	Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version	3.22.0
In Bioconductor since	BioC 2.2 (R-2.7) (11.5 years)
License	Artistic-2.0
Depends	R (>= 2.5.0)
Imports	BiocGenerics, methods, Biobase, graph, ellipse, flowViz, flowCore, clue, corpcor, mnormt, parallel
LinkingTo
Suggests	testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto
SystemRequirements	GNU make
Enhances
URL
Depends On Me	flowMerge, flowTrans
Imports Me	CONFESS, flowTrans, flowType, openCyto
Suggests Me	BiocGenerics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowClust_3.22.0.tar.gz
Windows Binary	flowClust_3.22.0.zip
Mac OS X 10.11 (El Capitan)	flowClust_3.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowClust
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowClust
Package Short Url	https://bioconductor.org/packages/flowClust/
Package Downloads Report	Download Stats